PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG146700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 299aa    MW: 30917.5 Da    PI: 6.7409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG146700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.8e-09216257955
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Pavir.5NG146700.1.p 216 AKVRRERIAEKLKVLQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 257
                          589*****************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.322207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-12208265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-12209267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-11209261No hitNo description
SMARTSM003532.5E-10213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6217257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAQASKRSAM QQPQLRPVMY GDEPSSMSLE LFGYHGGVVV DGDEGEGGSA AAALSLQLAF  60
DDDSFKHGAA SAGGDYYSSW AGYGGSGASS SSSSSVLSFE QAGSGGHHHH LGDDGCALWM  120
DVAAAGMVEH PPPHQHGSAC RFGLVSPGSS ADDDAGGLHI QGLGSDQPPA KATNKRARPD  180
GEVQAAAAAK KQCGGGRKSK AKAAPAPTKD PQSVAAKVRR ERIAEKLKVL QDLVPNGTKV  240
DLVTMLEKAI TYVKFLQLQV KVLAADEFWP AQGGKAPDLS QVKDALDAIL SSQQYPHK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971598.11e-140PREDICTED: transcription factor bHLH83-like
SwissprotQ9FJ006e-50BH086_ARATH; Putative transcription factor bHLH086
TrEMBLK3XS231e-140K3XS23_SETIT; Uncharacterized protein
STRINGSi004720m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.16e-45ROOT HAIR DEFECTIVE6